Search results for "Quantitative Biology::Neurons and Cognition"
showing 10 items of 111 documents
Extreme Learning Machines for Data Classification Tuning by Improved Bat Algorithm
2018
Single hidden layer feed forward neural networks are widely used for various practical problems. However, the training process for determining synaptic weights of such neural networks can be computationally very expensive. In this paper we propose a new learning algorithm for learning the synaptic weights of the single hidden layer feedforward neural networks in order to reduce the learning time. We propose combining the upgraded bat algorithm with the extreme learning machine. The proposed approach reduces the number of evaluations needed to train a neural network and efficiently finds optimal input weights and the hidden biases. The proposed algorithm was tested on standard benchmark clas…
Graph-theoretical derivation of brain structural connectivity
2020
Brain connectivity at the single neuron level can provide fundamental insights into how information is integrated and propagated within and between brain regions. However, it is almost impossible to adequately study this problem experimentally and, despite intense efforts in the field, no mathematical description has been obtained so far. Here, we present a mathematical framework based on a graph-theoretical approach that, starting from experimental data obtained from a few small subsets of neurons, can quantitatively explain and predict the corresponding full network properties. This model also changes the paradigm with which large-scale model networks can be built, from using probabilisti…
Analysis of Activity States of Local Neuronal Microcircuits in Mouse Brain
2018
Time series of neuronal activity corresponding to different activity states in mouse brain are analyzed in the time domain and the time-frequency domain. The signals are associated with either a slow wave brain state or a persistent brain state. For both states, characteristic spectral features are identified and a simple detector is proposed that is able to identify the brain state with low latency and high accuracy. In practice, being able to monitor the brain state online and in real time is crucial for improved in vivoexperiments and, ultimately, for a causal understanding of brain dynamics.
Brain-like large scale cognitive networks and dynamics
2018
A new approach to the study of the brain and its functions known as Human Connectomics has been recently established. Starting from magnetic resonance images (MRI) of brain scans, it is possible to identify the fibers that link brain areas and to build an adjacency matrix that connects these areas, thus creating the brain connectome. The topology of these networks provides a lot of information about the organizational structure of the brain (both structural and functional). Nevertheless this knowledge is rarely used to investigate the possible emerging brain dynamics linked to cognitive functions. In this work, we implement finite state models on neural networks to display the outcoming bra…
Spike-wave discharges in absence epilepsy: segregation of electrographic components reveals distinct pathways of seizure activity.
2020
Key points The major electrophysiological hallmarks of absence seizures are spike and wave discharges (SWDs), consisting of a sharp spike component and a slow wave component. In a widely accepted scheme, these components are functionally coupled and reflect an iterative progression of neuronal excitation during the spike and post-excitatory silence during the wave. In a genetic rat model of absence epilepsy, local pharmacological inhibition of the centromedian thalamus (CM) selectively suppressed the spike component, leaving self-contained waves in epidural recordings. Thalamic inputs induced activity in cortical microcircuits underlying the spike component, while intracortical oscillations…
Differential localization of voltage-gated potassium channels duringDrosophilametamorphosis
2020
Neuronal excitability is determined by the combination of different ion channels and their sub-neuronal localization. This study utilizes protein trap fly strains with endogenously tagged channels ...
Analyzing the feasibility of time correlated spectral entropy for the assessment of neuronal synchrony
2016
In this paper, we study neuronal network analysis based on microelectrode measurements. We search for potential relations between time correlated changes in spectral distributions and synchrony for neuronal network activity. Spectral distribution is quantified by spectral entropy as a measure of uniformity/complexity and this measure is calculated as a function of time for the recorded neuronal signals, i.e., time variant spectral entropy. Time variant correlations in the spectral distributions between different parts of a neuronal network, i.e., of concurrent measurements via different microelectrodes, are calculated to express the relation with a single scalar. We demonstrate these relati…
Neural net classification of REM sleep based on spectral measures as compared to nonlinear measures
2001
In various studies the implementation of nonlinear and nonconventional measures has significantly improved EEG (electroencephalogram) analyses as compared to using conventional parameters alone. A neural network algorithm well approved in our laboratory for the automatic recognition of rapid eye movement (REM) sleep was investigated in this regard. Originally based on a broad range of spectral power inputs, we additionally supplied the nonlinear measures of the largest Lyapunov exponent and correlation dimension as well as the nonconventional stochastic measures of spectral entropy and entropy of amplitudes. No improvement in the detection of REM sleep could be achieved by the inclusion of …
Nonlinear analysis of continuous ECG during sleep II. Dynamical measures
2000
The hypothesis that cardiac rhythms are associated with chaotic dynamics implicating a healthy flexibility has motivated the investigation of continuous ECG with methods of nonlinear system theory. Sleep is known to be associated with modulations of the sympathetic and parasympathetic control of cardiac dynamics. Thus, the differentiation of ECG signals recorded during different sleep stages can serve to determine the usefulness of nonlinear measures in discriminating ECG states in general. For this purpose the following six nonlinear measures were implemented: correlation dimension D2, Lyapunov exponent L1. Kolmogorov entropy K2, as well as three measures derived from the analysis of unsta…
Surrogate data analysis of sleep electroencephalograms reveals evidence for nonlinearity
1996
We tested the hypothesis of whether sleep electroencephalographic (EEG) signals of different time windows (164 s, 82 s, 41 s and 20.5 s) are in accordance with linear stochastic models. For this purpose we analyzed the all-night sleep electroencephalogram of a healthy subject and corresponding Gaussian-rescaled phase randomized surrogates with a battery of five non-linear measures. The following nonlinear measures were implemented: largest Lyapunov exponent L1, correlation dimension D2, and the Green-Savit measures delta 2, delta 4 and delta 6. The hypothesis of linear stochastic data was rejected with high statistical significance. L1 and D2 yielded the most pronounced effects, while the G…